The Valu-bilt catalog list the following bores for the Super A: 3", 3 1/8", 3 3/16", and 3 1/4".
Since you have the head off the engine. Crank the engine over and measure the distance from the top surface of the block to the top of the piston at TDC.
On the 201 cubic inch Allis Chalmers engine there are about 7 different pistons available. Including low compression/kerosene. The kerosene pistons set very low - approximately 1 inch below the surface of the block at TDC. The higher the compression ratio the closer the piston is to the surface of the block.
My thought is that the engine has been previously rebuilt with a new piston and sleeve set. If the engine were initially set up for kerosene - the owner would more than likely have installed the higher compression (bit more power) gasoline sleeve and piston set.
Eugene